A virus can stop bacteria from sharing genes for antibiotic resistance among themselves, Texas A&M AgriLife researchers have discovered. The results hint at new ways to treat infections and describe a new feature of a highly diverse, largely unexplored part of the biosphere.

Lanying Zeng, Ph.D., associate professor in the Texas A&M Department of Biochemistry and Biophysics
Lanying Zeng, Ph.D., associate professor in the Texas A&M Department of Biochemistry and Biophysics.

The study, published recently in Proceedings of the National Academy of Sciences, was led by Lanying Zeng, Ph.D., associate professor in the Texas A&M College of Agriculture and Life Sciences Department of Biochemistry and Biophysics.

How some phages infect bacteria

Viruses that only infect bacteria are called bacteriophages, or phages for short. Phages are the most numerous biological entities on Earth. Soil is rife with phages, as is the human gut, and phages that infect and destroy bacteria have found promising uses in combating antibiotic-resistant bacterial infections.

Some phages only infect bacteria whose surface contains cylindrical structures called pili. Named after the Latin word pilus, for spear, pili allow bacteria to transfer genes for advantageous traits, such as drug resistance, and enhance bacteria’s ability to move and to attack host cells. Because of pili’s link to bacterial virulence, researchers have wondered whether new medications could be created to inactivate this feature. While the ways bacteria benefit from pili are clear, how phages use pili to infect bacteria has remained elusive.

fluorescence microscopy image of an E. coli cell with pili that fluoresce green due to the presence of MS2 phages being used in antibiotic resistance work
Pili on an E. coli cell fluoresce green due to the presence of fluorescent MS2 phages. (Image courtesy of Lanying Zeng)

Phage competition

Zeng’s team used fluorescence microscopy to delve into how a phage, MS2, enters an E. coli cell. The researchers created MS2 phages that fluoresce and are fully infectious and stable. The phages attach to pili on E. coli cells, making the pili visible through a fluorescence microscope.

Through a series of experiments, Zeng, her graduate student Laith Harb, and the other coauthors obtained a detailed description of what happens when an MS2 phage infects an E. coli.

MiDetached from a dark E. coli cell, pili fluoresce green due to MS2 phages being used in antibiotic resistance work
After MS2 infection, pili detach from the E. coli cell. The pili shine green due to other MS2 phages still hanging on. (Image courtesy of Lanying Zeng)

The team discovered that after a phage attaches to a pilus, the pilus retracts, bringing the phage to the bacterial cell surface. The pilus then breaks off behind the phage. Whereas healthy E. coli replenish broken pili, cells infected by MS2 do not. In this way, other phages are prevented from infecting the same cell. The first phage to reach the cell gains a competitive advantage.

“It’s like, ‘OK, this cell is mine.’ Phages set up their own territory,” said Zeng, who is a core faculty member of the Center for Phage Technology, a part of Texas A&M AgriLife Research.

Because the phenomenon gives such a boost to the infecting phage, this occurrence may be widespread among other phage strains that employ pili to infect bacteria, Zeng added.

New ideas for medicine

Laith Harb, first author of the study and graduate student, Texas A&M University Department of Biochemistry and Biophysics
Laith Harb, first author of the antibiotic resistance study in bacteria and graduate student.

The results may be of use in medicine, Zeng said. First, using phages to decrease bacterial virulence may give the immune system time to fight off an infection. Second, the results point to a way of dealing with infections that may be gentler for patients than antibiotics or than using phage therapy to destroy bacteria.

“One advantage of our method versus traditional phage therapy is that you do not kill the cell, you just disarm it,” Zeng said. “Killing the cell may cause a problem, because inside the cell you may have a toxin that could be released into the host.”

Phages that target pili could also reinforce the action of antibiotics. Some bacterial infections only respond to high doses of antibiotics, which can cause side effects. Adding phages to the mix may allow doctors to decrease the needed antibiotic dosage.